HL_8OH6_049
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- UCUAAUUAG
- Length
- 9 nucleotides
- Bulged bases
- 8OH6|1|1|U|2276
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OH6_049 not in the Motif Atlas
- Homologous match to HL_8C3A_050
- Geometric discrepancy: 0.0474
- The information below is about HL_8C3A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
8OH6|1|1|U|2270
8OH6|1|1|C|2271
8OH6|1|1|U|2272
8OH6|1|1|A|2273
8OH6|1|1|A|2274
8OH6|1|1|U|2275
8OH6|1|1|U|2276
8OH6|1|1|A|2277
8OH6|1|1|G|2278
Current chains
- Chain 1
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain 6
- 60S ribosomal protein L23-A
- Chain B
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: