HL_8OH6_055
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- UUAAACGAUAACG
- Length
- 13 nucleotides
- Bulged bases
- 8OH6|1|1|A|2609, 8OH6|1|1|C|2616
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OH6_055 not in the Motif Atlas
- Homologous match to HL_8C3A_056
- Geometric discrepancy: 0.0403
- The information below is about HL_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
8OH6|1|1|U|2605
8OH6|1|1|U|2606
8OH6|1|1|A|2607
8OH6|1|1|A|2608
8OH6|1|1|A|2609
8OH6|1|1|C|2610
8OH6|1|1|G|2611
8OH6|1|1|A|2612
8OH6|1|1|U|2613
8OH6|1|1|A|2614
8OH6|1|1|A|2615
8OH6|1|1|C|2616
8OH6|1|1|G|2617
Current chains
- Chain 1
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain 2
- 60S ribosomal protein L21-A
- Chain AC
- 60S ribosomal protein L29
- Chain r
- 60S ribosomal protein L10
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