HL_8OH6_115
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 8OH6|1|AS|C|1842, 8OH6|1|AS|G|1844, 8OH6|1|AS|A|1846
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OH6_115 not in the Motif Atlas
- Homologous match to HL_8C3A_041
- Geometric discrepancy: 0.0871
- The information below is about HL_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8OH6|1|AS|C|1840
8OH6|1|AS|G|1841
8OH6|1|AS|C|1842
8OH6|1|AS|A|1843
8OH6|1|AS|G|1844
8OH6|1|AS|C|1845
8OH6|1|AS|A|1846
8OH6|1|AS|G|1847
Current chains
- Chain AS
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain AY
- 60S ribosomal protein L4-B
- Chain BK
- Ribosomal protein L22
- Chain CE
- 60S ribosomal protein L37-B
- Chain CG
- 60S ribosomal protein L39
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