HL_8OH6_122
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 8OH6|1|AS|A|2234
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OH6_122 not in the Motif Atlas
- Homologous match to HL_8C3A_049
- Geometric discrepancy: 0.085
- The information below is about HL_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8OH6|1|AS|G|2231
8OH6|1|AS|U|2232
8OH6|1|AS|A|2233
8OH6|1|AS|A|2234
8OH6|1|AS|C|2235
8OH6|1|AS|U|2236
8OH6|1|AS|A|2237
8OH6|1|AS|U|2238
8OH6|1|AS|G|2239
8OH6|1|AS|A|2240
8OH6|1|AS|C|2241
Current chains
- Chain AS
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain CM
- Small subunit ribosomal RNA; SSU rRNA
- Chain DK
- Ribosomal protein S23 (S12)
Coloring options: