HL_8OH6_163
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- AAUGUAAAUACCU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OH6_163 not in the Motif Atlas
- Homologous match to HL_8C3A_205
- Geometric discrepancy: 0.0539
- The information below is about HL_8C3A_205
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.2
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8OH6|1|B|A|518
8OH6|1|B|A|519
8OH6|1|B|U|520
8OH6|1|B|G|521
8OH6|1|B|U|522
8OH6|1|B|A|523
8OH6|1|B|A|524
8OH6|1|B|A|525
8OH6|1|B|U|526
8OH6|1|B|A|527
8OH6|1|B|C|528
8OH6|1|B|C|529
8OH6|1|B|U|530
Current chains
- Chain B
- 18S
Nearby chains
- Chain L
- Ribosomal protein S4
- Chain a
- 40S ribosomal protein S24
Coloring options: