HL_8OH6_208
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- AUUGAGAGCU
- Length
- 10 nucleotides
- Bulged bases
- 8OH6|1|CM|G|1228, 8OH6|1|CM|G|1230
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OH6_208 not in the Motif Atlas
- Homologous match to HL_8C3A_218
- Geometric discrepancy: 0.089
- The information below is about HL_8C3A_218
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop related
- Motif group
- HL_81538.1
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
8OH6|1|CM|A|1223
8OH6|1|CM|U|1224
8OH6|1|CM|U|1225
8OH6|1|CM|G|1226
8OH6|1|CM|A|1227
8OH6|1|CM|G|1228
8OH6|1|CM|A|1229
8OH6|1|CM|G|1230
8OH6|1|CM|C|1231
8OH6|1|CM|U|1232
Current chains
- Chain CM
- 18S
Nearby chains
- Chain AS
- Large subunit ribosomal RNA; LSU rRNA
- Chain DC
- 40S ribosomal protein S15
- Chain DQ
- 40S ribosomal protein S29A
- Chain DS
- Ubiquitin-40S ribosomal protein S31 fusion protein
Coloring options: