HL_8OHD_045

3D structure

PDB id

8OHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8OHD|1|5|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OHD_045 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0961

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8OHD|1|5|U|3796
8OHD|1|5|C|3797
8OHD|1|5|U|3798
8OHD|1|5|A|3799
8OHD|1|5|A|3800
8OHD|1|5|U|3801
8OHD|1|5|U|3802
8OHD|1|5|A|3803
8OHD|1|5|G|3804

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LV

60S ribosomal protein L23