HL_8OI5_012

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCUUCUGC

Length

8 nucleotides

Bulged bases

8OI5|1|1|U|542, 8OI5|1|1|C|543, 8OI5|1|1|U|544, 8OI5|1|1|G|545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_012 not in the Motif Atlas

Homologous match to HL_8C3A_012

Geometric discrepancy: 0.1051

The information below is about HL_8C3A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

8OI5|1|1|G|539
8OI5|1|1|C|540
8OI5|1|1|U|541
8OI5|1|1|U|542
8OI5|1|1|C|543
8OI5|1|1|U|544
8OI5|1|1|G|545
8OI5|1|1|C|546

Current chains

Chain 1

25S

Nearby chains

Chain 0

60S ribosomal protein L20

Chain q

60S ribosomal protein L9-B

Chain u

60S ribosomal protein L14-B