HL_8OI5_020

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8OI5|1|1|A|909, 8OI5|1|1|G|912

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_020 not in the Motif Atlas

Homologous match to HL_8P9A_133

Geometric discrepancy: 0.046

The information below is about HL_8P9A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8OI5|1|1|G|906
8OI5|1|1|C|907
8OI5|1|1|G|908
8OI5|1|1|A|909
8OI5|1|1|A|910
8OI5|1|1|A|911
8OI5|1|1|G|912
8OI5|1|1|A|913
8OI5|1|1|C|914

Current chains

Chain 1

25S

Nearby chains

Chain AK

60S ribosomal protein L37-B

Chain j

60S ribosomal protein L2-B

Chain v

60S ribosomal protein L15-A