HL_8OI5_022
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GUUGAAAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 8OI5|1|1|U|1024
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OI5_022 not in the Motif Atlas
- Homologous match to HL_8C3A_023
- Geometric discrepancy: 0.3673
- The information below is about HL_8C3A_023
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8OI5|1|1|G|1017
8OI5|1|1|U|1018
8OI5|1|1|U|1019
8OI5|1|1|G|1020
8OI5|1|1|A|1021
8OI5|1|1|A|1022
8OI5|1|1|A|1023
8OI5|1|1|U|1024
8OI5|1|1|G|1025
8OI5|1|1|A|1026
8OI5|1|1|C|1027
Current chains
- Chain 1
- 25S
Nearby chains
- Chain B
- Small subunit ribosomal RNA; SSU rRNA
- Chain R
- 40S ribosomal protein S15
- Chain i
- 60S ribosomal protein CAALFM_C304810CA
- Chain s
- 60S ribosomal protein L11-B
Coloring options: