HL_8OI5_037

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

8OI5|1|1|C|1842, 8OI5|1|1|G|1844, 8OI5|1|1|A|1846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_037 not in the Motif Atlas

Homologous match to HL_8C3A_041

Geometric discrepancy: 0.0541

The information below is about HL_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8OI5|1|1|C|1840
8OI5|1|1|G|1841
8OI5|1|1|C|1842
8OI5|1|1|A|1843
8OI5|1|1|G|1844
8OI5|1|1|C|1845
8OI5|1|1|A|1846
8OI5|1|1|G|1847

Current chains

Chain 1

25S

Nearby chains

Chain AK

60S ribosomal protein L37-B

Chain AM

60S ribosomal protein L39

Chain x

Ribosomal protein L22