HL_8OI5_049

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUCUG

Length

5 nucleotides

Bulged bases

8OI5|1|1|U|2546

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_049 not in the Motif Atlas

Homologous match to HL_8C3A_054

Geometric discrepancy: 0.0579

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8OI5|1|1|C|2543
8OI5|1|1|U|2544
8OI5|1|1|C|2545
8OI5|1|1|U|2546
8OI5|1|1|G|2547

Current chains

Chain 1

25S

Nearby chains

Chain AA

60S ribosomal protein L27