HL_8OI5_071

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAGCGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_071 not in the Motif Atlas

Homologous match to HL_8C3A_229

Geometric discrepancy: 0.0458

The information below is about HL_8C3A_229

Detailed Annotation

Pseudoknot with intercalation

Broad Annotation

No text annotation

Motif group

HL_61933.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8OI5|1|4|C|47
8OI5|1|4|A|48
8OI5|1|4|G|49
8OI5|1|4|C|50
8OI5|1|4|G|51
8OI5|1|4|A|52
8OI5|1|4|A|53
8OI5|1|4|A|54
8OI5|1|4|U|55
8OI5|1|4|G|56

Current chains

Chain 4

5.8S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 8

60S ribosomal protein L25

Chain AI

Ribosomal protein L29

Chain AK

60S ribosomal protein L37-B

Chain AM

60S ribosomal protein L39