HL_8OI5_091

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUGUUC

Length

6 nucleotides

Bulged bases

8OI5|1|AS|G|761

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_091 not in the Motif Atlas

Homologous match to HL_8C3A_018

Geometric discrepancy: 0.0707

The information below is about HL_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

8OI5|1|AS|G|759
8OI5|1|AS|U|760
8OI5|1|AS|G|761
8OI5|1|AS|U|762
8OI5|1|AS|U|763
8OI5|1|AS|C|764

Current chains

Chain AS

25S

Nearby chains

Chain BG

60S ribosomal protein L13

Chain CD

60S ribosomal protein L36