HL_8OI5_092

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_092 not in the Motif Atlas

Homologous match to HL_8C3A_019

Geometric discrepancy: 0.0824

The information below is about HL_8C3A_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8OI5|1|AS|G|840
8OI5|1|AS|G|841
8OI5|1|AS|A|842
8OI5|1|AS|A|843
8OI5|1|AS|A|844
8OI5|1|AS|C|845

Current chains

Chain AS

25S

Nearby chains

Chain CM

Small subunit ribosomal RNA; SSU rRNA

Chain DA

40S ribosomal protein S13