HL_8OI5_109

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AAUUUU

Length

6 nucleotides

Bulged bases

8OI5|1|AS|U|1758

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_109 not in the Motif Atlas

Homologous match to HL_8C3A_039

Geometric discrepancy: 0.3547

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8OI5|1|AS|A|1756
8OI5|1|AS|A|1757
8OI5|1|AS|U|1758
8OI5|1|AS|U|1759
8OI5|1|AS|U|1760
8OI5|1|AS|U|1761

Current chains

Chain AS

25S

Nearby chains

Chain BM

60S ribosomal protein L19-A

Chain BS

60S ribosomal protein L25