HL_8OI5_138

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

8OI5|1|AS|A|3208, 8OI5|1|AS|A|3209, 8OI5|1|AS|G|3211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_138 not in the Motif Atlas

Homologous match to HL_8C3A_070

Geometric discrepancy: 0.0711

The information below is about HL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8OI5|1|AS|C|3205
8OI5|1|AS|G|3206
8OI5|1|AS|G|3207
8OI5|1|AS|A|3208
8OI5|1|AS|A|3209
8OI5|1|AS|A|3210
8OI5|1|AS|G|3211
8OI5|1|AS|G|3212

Current chains

Chain AS

25S

Nearby chains

Chain AX

60S ribosomal protein L3

Chain BJ

Ribosomal protein L13