HL_8OI5_141
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UCCCCGUUCGAUCA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OI5_141 not in the Motif Atlas
- Geometric match to HL_8C3A_228
- Geometric discrepancy: 0.0566
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8OI5|1|AT|U|32
8OI5|1|AT|C|33
8OI5|1|AT|C|34
8OI5|1|AT|C|35
8OI5|1|AT|C|36
8OI5|1|AT|G|37
8OI5|1|AT|U|38
8OI5|1|AT|U|39
8OI5|1|AT|C|40
8OI5|1|AT|G|41
8OI5|1|AT|A|42
8OI5|1|AT|U|43
8OI5|1|AT|C|44
8OI5|1|AT|A|45
Current chains
- Chain AT
- 5S
Nearby chains
- Chain AS
- Large subunit ribosomal RNA; LSU rRNA
- Chain AZ
- Uncharacterized protein CaJ7.0206
- Chain BF
- 60S ribosomal protein L11-B
- Chain CL
- 60S ribosomal protein CAALFM_C304810CA
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