3D structure

PDB id
8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CGUUCG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8OI5_142 not in the Motif Atlas
Homologous match to HL_8C3A_073
Geometric discrepancy: 0.0517
The information below is about HL_8C3A_073
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_47787.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
10

Unit IDs

8OI5|1|AT|C|36
8OI5|1|AT|G|37
8OI5|1|AT|U|38
8OI5|1|AT|U|39
8OI5|1|AT|C|40
8OI5|1|AT|G|41

Current chains

Chain AT
5S

Nearby chains

Chain AS
Large subunit ribosomal RNA; LSU rRNA
Chain AZ
Uncharacterized protein CaJ7.0206
Chain BF
60S ribosomal protein L11-B
Chain CL
60S ribosomal protein CAALFM_C304810CA

Coloring options:


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