HL_8OI5_145
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAAUUGCAGAUAUUCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 8OI5|1|AU|U|80, 8OI5|1|AU|C|84, 8OI5|1|AU|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OI5_145 not in the Motif Atlas
- Homologous match to HL_8C3A_230
- Geometric discrepancy: 0.0746
- The information below is about HL_8C3A_230
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8OI5|1|AU|U|69
8OI5|1|AU|G|70
8OI5|1|AU|A|71
8OI5|1|AU|A|72
8OI5|1|AU|U|73
8OI5|1|AU|U|74
8OI5|1|AU|G|75
8OI5|1|AU|C|76
8OI5|1|AU|A|77
8OI5|1|AU|G|78
8OI5|1|AU|A|79
8OI5|1|AU|U|80
8OI5|1|AU|A|81
8OI5|1|AU|U|82
8OI5|1|AU|U|83
8OI5|1|AU|C|84
8OI5|1|AU|G|85
8OI5|1|AU|U|86
8OI5|1|AU|G|87
8OI5|1|AU|A|88
8OI5|1|AU|A|89
Current chains
- Chain AU
- 5.8S
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 9
- Ribosomal protein L24
- Chain AS
- Large subunit ribosomal RNA; LSU rRNA
- Chain BT
- Ribosomal protein L24
- Chain CC
- Ribosomal protein L29
- Chain CE
- 60S ribosomal protein L37-B
- Chain CG
- 60S ribosomal protein L39
Coloring options: