HL_8OI5_147

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

8OI5|1|AU|U|125

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_147 not in the Motif Atlas

Homologous match to HL_8C3A_077

Geometric discrepancy: 0.1151

The information below is about HL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8OI5|1|AU|G|124
8OI5|1|AU|U|125
8OI5|1|AU|A|126
8OI5|1|AU|U|127
8OI5|1|AU|U|128
8OI5|1|AU|C|129

Current chains

Chain AU

5.8S

Nearby chains

Chain AS

Large subunit ribosomal RNA; LSU rRNA