HL_8OI5_158

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8OI5|1|B|A|414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_158 not in the Motif Atlas

Homologous match to HL_8C3A_202

Geometric discrepancy: 0.0707

The information below is about HL_8C3A_202

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

54

Unit IDs

8OI5|1|B|C|412
8OI5|1|B|C|413
8OI5|1|B|A|414
8OI5|1|B|A|415
8OI5|1|B|G|416
8OI5|1|B|G|417

Current chains

Chain B

18S

Nearby chains

Chain 6

60S ribosomal protein L23-A

Chain I

40S ribosomal protein S6