HL_8OI5_170

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_170 not in the Motif Atlas

Homologous match to HL_8C3A_215

Geometric discrepancy: 0.0413

The information below is about HL_8C3A_215

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8OI5|1|B|A|1069
8OI5|1|B|G|1070
8OI5|1|B|A|1071
8OI5|1|B|A|1072
8OI5|1|B|A|1073
8OI5|1|B|U|1074

Current chains

Chain B

18S

Nearby chains

Chain E

Ribosomal protein S5

Chain Y

40S ribosomal protein S22-A

Chain c

40S ribosomal protein S26