HL_8OI5_200

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UAUUUUGUUGGUUUCUA

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_200 not in the Motif Atlas

Homologous match to HL_8C3A_210

Geometric discrepancy: 0.0912

The information below is about HL_8C3A_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08554.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8OI5|1|CM|U|813
8OI5|1|CM|A|814
8OI5|1|CM|U|815
8OI5|1|CM|U|816
8OI5|1|CM|U|817
8OI5|1|CM|U|818
8OI5|1|CM|G|819
8OI5|1|CM|U|820
8OI5|1|CM|U|821
8OI5|1|CM|G|822
8OI5|1|CM|G|823
8OI5|1|CM|U|824
8OI5|1|CM|U|825
8OI5|1|CM|U|826
8OI5|1|CM|C|827
8OI5|1|CM|U|828
8OI5|1|CM|A|829

Current chains

Chain CM

18S

Nearby chains

Chain CY

40S ribosomal protein S11A