HL_8OI5_204

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCUUUUAUUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_204 not in the Motif Atlas

Homologous match to HL_8C3A_236

Geometric discrepancy: 0.0679

The information below is about HL_8C3A_236

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53099.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8OI5|1|CM|U|1040
8OI5|1|CM|C|1041
8OI5|1|CM|U|1042
8OI5|1|CM|U|1043
8OI5|1|CM|U|1044
8OI5|1|CM|U|1045
8OI5|1|CM|A|1046
8OI5|1|CM|U|1047
8OI5|1|CM|U|1048
8OI5|1|CM|G|1049

Current chains

Chain CM

18S

Nearby chains

Chain CO

40S ribosomal protein S1

Chain DO

40S ribosomal protein S27