HL_8OI5_207

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

8OI5|1|CM|A|1181

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_207 not in the Motif Atlas

Homologous match to HL_8C3A_217

Geometric discrepancy: 0.0459

The information below is about HL_8C3A_217

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8OI5|1|CM|G|1173
8OI5|1|CM|A|1174
8OI5|1|CM|C|1175
8OI5|1|CM|U|1176
8OI5|1|CM|C|1177
8OI5|1|CM|A|1178
8OI5|1|CM|A|1179
8OI5|1|CM|C|1180
8OI5|1|CM|A|1181
8OI5|1|CM|C|1182

Current chains

Chain CM

18S

Nearby chains

Chain CL

60S ribosomal protein CAALFM_C304810CA

Chain DD

40S ribosomal protein S16

Chain DH

Ribosomal protein S10

Chain DQ

40S ribosomal protein S29A