HL_8OI5_210

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8OI5|1|CM|U|1299

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_210 not in the Motif Atlas

Homologous match to HL_8C3A_220

Geometric discrepancy: 0.1188

The information below is about HL_8C3A_220

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8OI5|1|CM|C|1294
8OI5|1|CM|U|1295
8OI5|1|CM|U|1296
8OI5|1|CM|A|1297
8OI5|1|CM|A|1298
8OI5|1|CM|U|1299
8OI5|1|CM|U|1300
8OI5|1|CM|G|1301

Current chains

Chain CM

18S

Nearby chains

Chain DE

40S ribosomal protein S17-B