HL_8OI5_212

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_212 not in the Motif Atlas

Homologous match to HL_8C3A_222

Geometric discrepancy: 0.0621

The information below is about HL_8C3A_222

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.1

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

8

Unit IDs

8OI5|1|CM|U|1382
8OI5|1|CM|U|1383
8OI5|1|CM|U|1384
8OI5|1|CM|C|1385
8OI5|1|CM|A|1386
8OI5|1|CM|A|1387
8OI5|1|CM|G|1388

Current chains

Chain CM

18S

Nearby chains

Chain DE

40S ribosomal protein S17-B

Chain DP

40S ribosomal protein S28-B