HL_8OI5_215

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

8OI5|1|CM|C|1583, 8OI5|1|CM|G|1588

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_215 not in the Motif Atlas

Homologous match to HL_8C3A_225

Geometric discrepancy: 0.0531

The information below is about HL_8C3A_225

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01609.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

17

Unit IDs

8OI5|1|CM|G|1581
8OI5|1|CM|U|1582
8OI5|1|CM|C|1583
8OI5|1|CM|A|1584
8OI5|1|CM|U|1585
8OI5|1|CM|C|1586
8OI5|1|CM|A|1587
8OI5|1|CM|G|1588
8OI5|1|CM|C|1589

Current chains

Chain CM

18S

Nearby chains

Chain CQ

Ribosomal protein S3

Chain DD

40S ribosomal protein S16

Chain DG

40S ribosomal protein S19-A

Chain DH

Ribosomal protein S10

Chain DQ

40S ribosomal protein S29A