HL_8OIN_001

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUUGGUCCUGG

Length

11 nucleotides

Bulged bases

8OIN|1|AA|U|10

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIN_001 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.1782

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.1

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8OIN|1|AA|U|8
8OIN|1|AA|U|9
8OIN|1|AA|U|10
8OIN|1|AA|G|11
8OIN|1|AA|G|12
8OIN|1|AA|U|13
8OIN|1|AA|C|14
8OIN|1|AA|C|15
8OIN|1|AA|U|16
8OIN|1|AA|G|17
8OIN|1|AA|G|18

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AI

mRNA

Chain Ad

28S ribosomal protein S5, mitochondrial isoform X2