HL_8OIN_021

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAACCUAUA

Length

9 nucleotides

Bulged bases

8OIN|1|AA|C|884, 8OIN|1|AA|U|885

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIN_021 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.356

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8OIN|1|AA|U|880
8OIN|1|AA|A|881
8OIN|1|AA|A|882
8OIN|1|AA|C|883
8OIN|1|AA|C|884
8OIN|1|AA|U|885
8OIN|1|AA|A|886
8OIN|1|AA|U|887
8OIN|1|AA|A|888

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AV

Mitochondrial ribosomal protein S27

Chain Aj

Mitochondrial ribosomal protein S34