HL_8OIN_036

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUACAGC

Length

8 nucleotides

Bulged bases

8OIN|1|B8|A|445, 8OIN|1|B8|G|448

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIN_036 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1769

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

8OIN|1|B8|G|442
8OIN|1|B8|G|443
8OIN|1|B8|U|444
8OIN|1|B8|A|445
8OIN|1|B8|C|446
8OIN|1|B8|A|447
8OIN|1|B8|G|448
8OIN|1|B8|C|449

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BP

Mitochondrial ribosomal protein L10

Chain BU

uL16m

Chain Be

Mitochondrial ribosomal protein L57