HL_8OIN_042

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AAUAAU

Length

6 nucleotides

Bulged bases

8OIN|1|B8|A|689

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIN_042 not in the Motif Atlas

Geometric match to HL_5TBW_044

Geometric discrepancy: 0.3751

The information below is about HL_5TBW_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.1

Basepair signature

cWW

Number of instances in this motif group

4

Unit IDs

8OIN|1|B8|A|688
8OIN|1|B8|A|689
8OIN|1|B8|U|690
8OIN|1|B8|A|691
8OIN|1|B8|A|692
8OIN|1|B8|U|693

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BA

uL22m

Chain BV

bL17m