HL_8OIN_048

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAUUCUGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIN_048 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.362

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8OIN|1|B8|G|906
8OIN|1|B8|U|907
8OIN|1|B8|A|908
8OIN|1|B8|U|909
8OIN|1|B8|U|910
8OIN|1|B8|C|911
8OIN|1|B8|U|912
8OIN|1|B8|G|913
8OIN|1|B8|A|914
8OIN|1|B8|C|915

Current chains

Chain B8

16S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AG

P-site Met-tRNA(fMet)

Chain Aa

Peptide chain release factor 1, mitochondrial