HL_8OIN_055
3D structure
- PDB id
- 8OIN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAAACCAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OIN_055 not in the Motif Atlas
- Geometric match to HL_4WF9_053
- Geometric discrepancy: 0.1695
- The information below is about HL_4WF9_053
- Detailed Annotation
- GNRA with extra cWW
- Broad Annotation
- GNRA with extra cWW
- Motif group
- HL_87268.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
8OIN|1|B8|C|1198
8OIN|1|B8|A|1199
8OIN|1|B8|A|1200
8OIN|1|B8|A|1201
8OIN|1|B8|C|1202
8OIN|1|B8|C|1203
8OIN|1|B8|A|1204
8OIN|1|B8|G|1205
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain BD
- Mitochondrial ribosomal protein L27
- Chain BK
- Mitochondrial ribosomal protein L35
- Chain BT
- 39S ribosomal protein L15, mitochondrial
- Chain Bn
- Mitochondrial ribosomal protein L38
Coloring options: