HL_8OIN_069

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUAAACCCC

Length

10 nucleotides

Bulged bases

8OIN|1|AA|C|576

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIN_069 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.2841

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8OIN|1|AA|G|568
8OIN|1|AA|A|569
8OIN|1|AA|U|570
8OIN|1|AA|A|571
8OIN|1|AA|A|572
8OIN|1|AA|A|573
8OIN|1|AA|C|574
8OIN|1|AA|C|575
8OIN|1|AA|C|576
8OIN|1|AA|C|577

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AG

P-site Met-tRNA(fMet)

Chain AH

Mitochondrial ribosomal protein S10

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain Ag

uS9m