HL_8OIP_009

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGUAAAAAG

Length

10 nucleotides

Bulged bases

8OIP|1|AA|U|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIP_009 not in the Motif Atlas

Homologous match to HL_4LFB_015

Geometric discrepancy: 0.1923

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8OIP|1|AA|C|342
8OIP|1|AA|U|343
8OIP|1|AA|G|344
8OIP|1|AA|U|345
8OIP|1|AA|A|346
8OIP|1|AA|A|347
8OIP|1|AA|A|348
8OIP|1|AA|A|349
8OIP|1|AA|A|350
8OIP|1|AA|G|351

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AF

Mitochondrial ribosomal protein S7

Chain AQ

28S ribosomal protein S21, mitochondrial

Chain Ai

Mitochondrial ribosomal protein S11