HL_8OIQ_023

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

8OIQ|1|B8|A|832, 8OIQ|1|B8|C|833, 8OIQ|1|B8|C|834, 8OIQ|1|B8|A|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIQ_023 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.1702

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8OIQ|1|B8|U|829
8OIQ|1|B8|U|830
8OIQ|1|B8|U|831
8OIQ|1|B8|A|832
8OIQ|1|B8|C|833
8OIQ|1|B8|C|834
8OIQ|1|B8|A|835
8OIQ|1|B8|A|836
8OIQ|1|B8|A|837
8OIQ|1|B8|A|838
8OIQ|1|B8|A|839

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BJ

Mitochondrial ribosomal protein L34

Chain BL

Mitochondrial ribosomal protein L2

Chain Bu

Mitochondrial ribosomal protein L45