HL_8OIQ_027

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCCAA(1MA)UAA

Length

9 nucleotides

Bulged bases

8OIQ|1|B8|U|950

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIQ_027 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.2262

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8OIQ|1|B8|U|944
8OIQ|1|B8|C|945
8OIQ|1|B8|C|946
8OIQ|1|B8|A|947
8OIQ|1|B8|A|948
8OIQ|1|B8|1MA|949
8OIQ|1|B8|U|950
8OIQ|1|B8|A|951
8OIQ|1|B8|A|952

Current chains

Chain B8

16S rRNA

Nearby chains

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain BS

Mitochondrial ribosomal protein L14