HL_8OIR_011
3D structure
- PDB id
- 8OIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S human mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GA(5MU)UAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 8OIR|1|AA|U|434
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OIR_011 not in the Motif Atlas
- Homologous match to HL_4LFB_017
- Geometric discrepancy: 0.072
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8OIR|1|AA|G|427
8OIR|1|AA|A|428
8OIR|1|AA|5MU|429
8OIR|1|AA|U|430
8OIR|1|AA|A|431
8OIR|1|AA|G|432
8OIR|1|AA|A|433
8OIR|1|AA|U|434
8OIR|1|AA|A|435
8OIR|1|AA|C|436
8OIR|1|AA|C|437
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AF
- 28S ribosomal protein S7, mitochondrial
- Chain AG
- P-site Met-tRNA(Met)
- Chain AI
- mRNA
- Chain AQ
- 28S ribosomal protein S21, mitochondrial
- Chain Ai
- 28S ribosomal protein S11, mitochondrial
- Chain B8
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: