HL_8OIR_014

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUAAACCCC

Length

10 nucleotides

Bulged bases

8OIR|1|AA|C|578

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIR_014 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.3719

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8OIR|1|AA|G|570
8OIR|1|AA|A|571
8OIR|1|AA|U|572
8OIR|1|AA|A|573
8OIR|1|AA|A|574
8OIR|1|AA|A|575
8OIR|1|AA|C|576
8OIR|1|AA|C|577
8OIR|1|AA|C|578
8OIR|1|AA|C|579

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AG

P-site Met-tRNA(Met)

Chain AH

28S ribosomal protein S10, mitochondrial

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain Ag

28S ribosomal protein S9, mitochondrial