HL_8OIR_031

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAAAAGA

Length

7 nucleotides

Bulged bases

8OIR|1|B8|G|269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIR_031 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.3013

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

8OIR|1|B8|U|264
8OIR|1|B8|A|265
8OIR|1|B8|A|266
8OIR|1|B8|A|267
8OIR|1|B8|A|268
8OIR|1|B8|G|269
8OIR|1|B8|A|270

Current chains

Chain B8

16S rRNA

Nearby chains

Chain AD

Aurora kinase A-interacting protein

Chain BL

39S ribosomal protein L2, mitochondrial

Chain Bm

39S ribosomal protein L37, mitochondrial