HL_8OIR_033

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGACAAAC

Length

9 nucleotides

Bulged bases

8OIR|1|B8|A|321, 8OIR|1|B8|A|324

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIR_033 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.2509

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8OIR|1|B8|G|318
8OIR|1|B8|C|319
8OIR|1|B8|G|320
8OIR|1|B8|A|321
8OIR|1|B8|C|322
8OIR|1|B8|A|323
8OIR|1|B8|A|324
8OIR|1|B8|A|325
8OIR|1|B8|C|326

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BJ

39S ribosomal protein L34, mitochondrial

Chain BL

39S ribosomal protein L2, mitochondrial

Chain Bu

39S ribosomal protein L45, mitochondrial