HL_8OIR_036

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAACAGC

Length

8 nucleotides

Bulged bases

8OIR|1|B8|A|440, 8OIR|1|B8|G|443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIR_036 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.0993

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8OIR|1|B8|G|437
8OIR|1|B8|G|438
8OIR|1|B8|A|439
8OIR|1|B8|A|440
8OIR|1|B8|C|441
8OIR|1|B8|A|442
8OIR|1|B8|G|443
8OIR|1|B8|C|444

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BP

39S ribosomal protein L10, mitochondrial

Chain BU

39S ribosomal protein L16, mitochondrial

Chain Be

Ribosomal protein 63, mitochondrial