HL_8OIR_038
3D structure
- PDB id
- 8OIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S human mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUAAAAGCAG
- Length
- 11 nucleotides
- Bulged bases
- 8OIR|1|B8|A|511
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OIR_038 not in the Motif Atlas
- Homologous match to HL_6PRV_001
- Geometric discrepancy: 0.1417
- The information below is about HL_6PRV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_20174.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8OIR|1|B8|C|505
8OIR|1|B8|C|506
8OIR|1|B8|U|507
8OIR|1|B8|A|508
8OIR|1|B8|A|509
8OIR|1|B8|A|510
8OIR|1|B8|A|511
8OIR|1|B8|G|512
8OIR|1|B8|C|513
8OIR|1|B8|A|514
8OIR|1|B8|G|515
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain Aa
- Peptide chain release factor 1, mitochondrial
- Chain BQ
- 39S ribosomal protein L11, mitochondrial
- Chain BU
- 39S ribosomal protein L16, mitochondrial
- Chain Bc
- 39S ribosomal protein L54, mitochondrial
Coloring options: