HL_8OIR_039

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIR_039 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.1341

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8OIR|1|B8|C|532
8OIR|1|B8|G|533
8OIR|1|B8|U|534
8OIR|1|B8|U|535
8OIR|1|B8|C|536
8OIR|1|B8|A|537
8OIR|1|B8|A|538
8OIR|1|B8|G|539

Current chains

Chain B8

16S rRNA

Nearby chains

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain BQ

39S ribosomal protein L11, mitochondrial

Chain Bc

39S ribosomal protein L54, mitochondrial