HL_8OIR_041

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAACAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIR_041 not in the Motif Atlas

Geometric match to HL_6DME_002

Geometric discrepancy: 0.3077

The information below is about HL_6DME_002

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

8OIR|1|B8|A|649
8OIR|1|B8|A|650
8OIR|1|B8|A|651
8OIR|1|B8|C|652
8OIR|1|B8|A|653
8OIR|1|B8|U|654

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BH

39S ribosomal protein L32, mitochondrial

Chain BV

39S ribosomal protein L17, mitochondrial

Chain Bi

39S ribosomal protein S30, mitochondrial