HL_8OIR_048
3D structure
- PDB id
- 8OIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S human mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUACCCUAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OIR_048 not in the Motif Atlas
- Homologous match to HL_9DFE_046
- Geometric discrepancy: 0.4107
- The information below is about HL_9DFE_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82185.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8OIR|1|B8|G|904
8OIR|1|B8|U|905
8OIR|1|B8|A|906
8OIR|1|B8|C|907
8OIR|1|B8|C|908
8OIR|1|B8|C|909
8OIR|1|B8|U|910
8OIR|1|B8|A|911
8OIR|1|B8|A|912
8OIR|1|B8|C|913
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AG
- P-site Met-tRNA(Met)
- Chain Aa
- Peptide chain release factor 1, mitochondrial
- Chain Bp
- 39S ribosomal protein L40, mitochondrial
Coloring options: