HL_8OIR_049

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUAA(1MA)UAG

Length

9 nucleotides

Bulged bases

8OIR|1|B8|U|948

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIR_049 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.216

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8OIR|1|B8|C|942
8OIR|1|B8|U|943
8OIR|1|B8|U|944
8OIR|1|B8|A|945
8OIR|1|B8|A|946
8OIR|1|B8|1MA|947
8OIR|1|B8|U|948
8OIR|1|B8|A|949
8OIR|1|B8|G|950

Current chains

Chain B8

16S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain BS

39S ribosomal protein L14, mitochondrial