HL_8OJ5_021

3D structure

PDB id

8OJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OJ5_021 not in the Motif Atlas

Geometric match to HL_5TBW_044

Geometric discrepancy: 0.3197

The information below is about HL_5TBW_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.1

Basepair signature

cWW

Number of instances in this motif group

4

Unit IDs

8OJ5|1|5|G|1764
8OJ5|1|5|A|1765
8OJ5|1|5|A|1766
8OJ5|1|5|A|1767
8OJ5|1|5|C|1768

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

E3 UFM1-protein ligase 1